SRX203337
GSM1033558: Benchmark input 2x10e7; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4+
NA
NA

Attributes by original data submitter

Sample

source_name
Cultured CD4+ cells
cell number
20000000
chip antibody
Input Mnase digested DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26570432
Reads aligned (%)
99.0
Duplicates removed (%)
9.2
Number of peaks
303 (qval < 1E-05)

hg19

Number of total reads
26570432
Reads aligned (%)
98.0
Duplicates removed (%)
9.6
Number of peaks
373 (qval < 1E-05)

Base call quality data from DBCLS SRA