SRX203202
GSM1032632: CMP H3K4me2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
Common myeloid progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
CMP
strain
CD1
age
E15
tissue
liver
cell type
CMP
genome/variation
wild-type
antibody
H3K4me2, antibody vendor, cat#, lot #: Millipore, 07-030, DAM1724042

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17473952
Reads aligned (%)
87.2
Duplicates removed (%)
56.3
Number of peaks
5915 (qval < 1E-05)

mm9

Number of total reads
17473952
Reads aligned (%)
87.1
Duplicates removed (%)
56.5
Number of peaks
5878 (qval < 1E-05)

Base call quality data from DBCLS SRA