SRX202994
GSM1032195: H3K27ac ChIP: KAP1 KO IP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1032195
strain
C57BL/6
cell type
Embryonic stem cells (ES3)
time-point
4 days post puromycin selection of KAP1 shRNA vector (a time-point with similar expression to 4 days post KO)
chip antibody
H3K27ac (Abcam: ab4729)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
116248381
Reads aligned (%)
73.2
Duplicates removed (%)
32.3
Number of peaks
10232 (qval < 1E-05)

mm9

Number of total reads
116248381
Reads aligned (%)
73.0
Duplicates removed (%)
32.4
Number of peaks
10279 (qval < 1E-05)

Base call quality data from DBCLS SRA