SRX202967
GSM1032075: RUNX1 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
SEM
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
Acute lymphoblastic leukemia cells with MLL/AF4 translocation
cell type
SEM
chip antibody
Runx1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30834270
Reads aligned (%)
98.8
Duplicates removed (%)
3.9
Number of peaks
60680 (qval < 1E-05)

hg19

Number of total reads
30834270
Reads aligned (%)
98.1
Duplicates removed (%)
4.0
Number of peaks
60311 (qval < 1E-05)

Base call quality data from DBCLS SRA