SRX202957
GSM1031977: Tot2, MSCV-IRF8, Day3, anti-PU.1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Spi1

Cell type

Cell type Class
Blood
Cell type
Tot2
NA
NA

Attributes by original data submitter

Sample

source_name
Tot2 cells, MSCV-IRF8 transduced, Day3
cell type
Myeloid progenitor cells
culture condition
MSCV-IRF8 transduced
treatment period
3 days
chip antibody
rabbit anti-PU.1 antibody (sc-352, Santa Cruz)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
51325856
Reads aligned (%)
86.0
Duplicates removed (%)
37.8
Number of peaks
107017 (qval < 1E-05)

mm9

Number of total reads
51325856
Reads aligned (%)
85.8
Duplicates removed (%)
37.8
Number of peaks
107090 (qval < 1E-05)

Base call quality data from DBCLS SRA