SRX20282940
GSM7324193: MCF7,ERα,DIM, Biol Rep3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Human Breast Cancer Cell
cell line
Human Breast Cancer Cell
cell type
MCF-7
chip antibody
ERα (Santa Cruz, #sc-542)
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM7324193
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
QIAquick Gel Extraction Kit (Qiagen) MicroPlex Library Preparation Kit from Diagenode

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34444022
Reads aligned (%)
98.8
Duplicates removed (%)
63.9
Number of peaks
45676 (qval < 1E-05)

hg19

Number of total reads
34444022
Reads aligned (%)
98.5
Duplicates removed (%)
64.2
Number of peaks
45491 (qval < 1E-05)

Base call quality data from DBCLS SRA