SRX202795
GSM1030542: PolII ChIP-seq (10T1/2); Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Embryonic fibroblast
Cell type
C3H/10T1/2
NA
NA

Attributes by original data submitter

Sample

source_name
C3H10T1/2 mouse cells
cell type
C3H10T1/2 cells
chip antibody
Pol II (monoclonal 8GW16, protein-A purified)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
59609692
Reads aligned (%)
87.7
Duplicates removed (%)
15.1
Number of peaks
23017 (qval < 1E-05)

mm9

Number of total reads
59609692
Reads aligned (%)
87.6
Duplicates removed (%)
15.1
Number of peaks
23028 (qval < 1E-05)

Base call quality data from DBCLS SRA