Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
cell type
EPOP Knockout
chip antibody
PolII S5; BioLegend, 904001

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA were extracted using antibodies for EPOP, H3K4me3, Elongin B, RNA Polymerase II S5, USP7 or H2Bub. RNA-Seq samples were prepared by isolating total RNA using Trizol, mRNA Isolation, heat fractionation, reverse transcription and second strand synthesis Libraries were constructed of 10-50 ng of DNA following Illumina's® protocol

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
19467080
Reads aligned (%)
91.5
Duplicates removed (%)
23.1
Number of peaks
20710 (qval < 1E-05)

mm9

Number of total reads
19467080
Reads aligned (%)
91.3
Duplicates removed (%)
23.2
Number of peaks
20641 (qval < 1E-05)

Base call quality data from DBCLS SRA