SRX2024392
FVA mouse spleen histone marks

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

breed
BALB/cJ
age
12 weeks
sex
female
tissue
spleen

Sequenced DNA Library

library_name
ChIP-exo H3K4me1, H3K27ac, H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
441434959
Reads aligned (%)
73.9
Duplicates removed (%)
51.8
Number of peaks
101297 (qval < 1E-05)

mm9

Number of total reads
441434959
Reads aligned (%)
73.8
Duplicates removed (%)
51.8
Number of peaks
101342 (qval < 1E-05)

Base call quality data from DBCLS SRA