SRX201999
GSM1027496: MC3T3BONED15 Runx2Veh; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Runx2

Cell type

Cell type Class
Bone
Cell type
MC3T3-E1
NA
NA

Attributes by original data submitter

Sample

source_name
MC3T3-E1 cells differentiated for 15 days
passage number
5 - 12
antibody
RUNX2 (Santa Cruz, M-70, sc10758, lot# D1411)
cell line
MC3T3-E1 differentiated for 15 days
treatment
ethanol vehicle

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
200129132
Reads aligned (%)
95.0
Duplicates removed (%)
82.0
Number of peaks
23187 (qval < 1E-05)

mm9

Number of total reads
200129132
Reads aligned (%)
94.8
Duplicates removed (%)
82.1
Number of peaks
23129 (qval < 1E-05)

Base call quality data from DBCLS SRA