SRX201981
GSM1027478: MC3T3 Runx2Veh; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Runx2

Cell type

Cell type Class
Bone
Cell type
MC3T3-E1
NA
NA

Attributes by original data submitter

Sample

source_name
MC3T3-E1 cells
passage number
5 - 12
antibody
RUNX2 (Santa Cruz, M-70, sc10758, lot# D1411)
cell line
MC3T3-E1
treatment
ethanol vehicle

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
77960986
Reads aligned (%)
89.2
Duplicates removed (%)
54.1
Number of peaks
36800 (qval < 1E-05)

mm9

Number of total reads
77960986
Reads aligned (%)
89.0
Duplicates removed (%)
54.2
Number of peaks
36757 (qval < 1E-05)

Base call quality data from DBCLS SRA