SRX201899
GSM1027427: Rpb3 ChIP-seq from Piwi-KD rep2; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Cell line
Cell type
OSC
Tissue Source
ovary
Developmental Stage
adult stage

Attributes by original data submitter

Sample

source_name
Rpb3 ChIP-seq_Piwi-KD
genotype/variation
RNAi piwi
Stage
96h after transfection
tissue/cell type
Ovarian Somatic Cells (OSC)
molecule subtype
Rpb3-bound DNA
chip antibody
antiRpb3
chip antibody information
gift of Karen Adelman; Adelman et al. Mol Cell 2005

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
38248494
Reads aligned (%)
95.6
Duplicates removed (%)
50.2
Number of peaks
10340 (qval < 1E-05)

dm3

Number of total reads
38248494
Reads aligned (%)
95.7
Duplicates removed (%)
49.2
Number of peaks
10721 (qval < 1E-05)

Base call quality data from DBCLS SRA