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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: OSC
ATCC
MeSH
RIKEN BRC
SRX201897
GSM1027425: Rpb3 ChIP-seq from GFP-KD rep2; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Cell line
Cell type
OSC
Tissue Source
ovary
Developmental Stage
adult stage
Attributes by original data submitter
Sample
source_name
Rpb3 ChIP-seq_GFP-KD
genotype/variation
RNAi gfp
Stage
96h after transfection
tissue/cell type
Ovarian Somatic Cells (OSC)
molecule subtype
Rpb3-bound DNA
chip antibody
antiRpb3
chip antibody information
gift of Karen Adelman; Adelman et al. Mol Cell 2005
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
33841224
Reads aligned (%)
95.3
Duplicates removed (%)
38.8
Number of peaks
9295 (qval < 1E-05)
dm3
Number of total reads
33841224
Reads aligned (%)
95.5
Duplicates removed (%)
37.3
Number of peaks
9028 (qval < 1E-05)
Base call quality data from
DBCLS SRA