SRX201838
Digital Genomic Footprinting assay of Fetal Thymus

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Thymus
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Thymus
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-24409
DONOR_AGE
day 113
DONOR_HEALTH_STATUS
NA
DONOR_SEX
female
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0002370

Sequenced DNA Library

library_name
DGF.DS20341
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
630852138
Reads aligned (%)
57.7
Duplicates removed (%)
28.0
Number of peaks
108187 (qval < 1E-05)

hg19

Number of total reads
630852138
Reads aligned (%)
57.0
Duplicates removed (%)
29.7
Number of peaks
105819 (qval < 1E-05)

Base call quality data from DBCLS SRA