Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Digestive tract

Cell type

Gastric primary sample

NA

NA

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

Shin Lin, Stanford University

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Gastric

TISSUE_DEPOT

N/A

COLLECTION_METHOD

Autopsy

DONOR_ID

STL003

DONOR_AGE

34

DONOR_HEALTH_STATUS

polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)

DONOR_SEX

male

DONOR_ETHNICITY

Caucasian

sample_term_id

UBERON_0000945

Sequenced DNA Library

library_name

DNase.DS20748

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

58741701

Reads aligned (%)

85.1

Duplicates removed (%)

7.7

Number of peaks

63160 (qval < 1E-05)

hg19

Number of total reads

58741701

Reads aligned (%)

84.5

Duplicates removed (%)

9.0

Number of peaks

62893 (qval < 1E-05)