Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Kidney

Cell type

Kidney Pelvis

MeSH Description

The flattened, funnel-shaped expansion connecting the URETER to the KIDNEY CALICES.

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

University of Washington, Congenital Defects Lab. Ian Glass

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Fetal Renal Pelvis

TISSUE_DEPOT

UW

COLLECTION_METHOD

fetal

DONOR_ID

H-24493

DONOR_AGE

day 89

DONOR_HEALTH_STATUS

NA

DONOR_SEX

Female

DONOR_ETHNICITY

NA

sample_term_id

UBERON_0001224

Sequenced DNA Library

library_name

DNase.DS20570

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

57746842

Reads aligned (%)

86.9

Duplicates removed (%)

14.3

Number of peaks

90027 (qval < 1E-05)

hg19

Number of total reads

57746842

Reads aligned (%)

86.4

Duplicates removed (%)

15.2

Number of peaks

94003 (qval < 1E-05)