SRX201800
Chromatin accessibility assay of Fetal Thymus

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Thymus
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Thymus
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-24297
DONOR_AGE
day 104
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Male
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0002370

Sequenced DNA Library

library_name
DNase.DS19675
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
68804524
Reads aligned (%)
79.9
Duplicates removed (%)
10.6
Number of peaks
49383 (qval < 1E-05)

hg19

Number of total reads
68804524
Reads aligned (%)
79.2
Duplicates removed (%)
12.3
Number of peaks
49166 (qval < 1E-05)

Base call quality data from DBCLS SRA