SRX201299
GSM1024789: UW DnaseSeq CD4+ Naive Wb11970640Rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD4+
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+_Naive_Wb11970640
biomaterial_provider
Dr. John Stamatoyannopoulos at UW
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
CD4+_Naive_Wb11970640
cell organism
human
cell description
CD4+ naive sorted cells, donor is Caucasian, male 26 year old, primary pheresis of single normal subject
cell karyotype
normal
cell lineage
mesoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
labexpid
DS14108
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
1

Sequenced DNA Library

library_name
GSM1024789: UW_DnaseSeq_CD4+_Naive_Wb11970640Rep1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29438533
Reads aligned (%)
97.4
Duplicates removed (%)
20.1
Number of peaks
34905 (qval < 1E-05)

hg19

Number of total reads
29438533
Reads aligned (%)
96.5
Duplicates removed (%)
21.6
Number of peaks
34757 (qval < 1E-05)

Base call quality data from DBCLS SRA