SRX201290
GSM1024780: UW DnaseSeq GM04503Rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Epidermis
Cell type
GM04503
Tissue
skin
Description
adult twin pair fibroblasts, monozygotic twin of GM04504

Attributes by original data submitter

Sample

source_name
GM04503
biomaterial_provider
Coriell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
GM04503
cell organism
human
cell description
adult twin pair fibroblasts, monozygotic twin of GM04504
cell karyotype
normal
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
labexpid
DS18640
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
2

Sequenced DNA Library

library_name
GSM1024780: UW_DnaseSeq_GM04503Rep2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36392818
Reads aligned (%)
96.1
Duplicates removed (%)
34.5
Number of peaks
92989 (qval < 1E-05)

hg19

Number of total reads
36392818
Reads aligned (%)
95.5
Duplicates removed (%)
36.0
Number of peaks
92844 (qval < 1E-05)

Base call quality data from DBCLS SRA