SRX201280
GSM1024770: UW DnaseSeq CD34+ MobilizedRep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

source_name
CD34+_Mobilized
biomaterial_provider
Dr. Heimfeld Lab at FHCRC
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
CD34+_Mobilized
cell organism
human
cell description
hematopoietic progenitor cells- mobilized, from donor RO01679.
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
labexpid
DS16814
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
1

Sequenced DNA Library

library_name
GSM1024770: UW_DnaseSeq_CD34+_MobilizedRep1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
60889564
Reads aligned (%)
95.8
Duplicates removed (%)
35.6
Number of peaks
100610 (qval < 1E-05)

hg19

Number of total reads
60889564
Reads aligned (%)
95.4
Duplicates removed (%)
36.5
Number of peaks
100368 (qval < 1E-05)

Base call quality data from DBCLS SRA