SRX201279
GSM1024769: UW DnaseSeq HBVSMCRep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
HBVSMC
Tissue
blood vessel
Lineage
mesoderm
Description
brain vascular smooth muscle cells.

Attributes by original data submitter

Sample

source_name
HBVSMC
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
HBVSMC
cell organism
human
cell description
brain vascular smooth muscle cells.
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
labexpid
DS14845
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
2

Sequenced DNA Library

library_name
GSM1024769: UW_DnaseSeq_HBVSMCRep2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32854662
Reads aligned (%)
96.9
Duplicates removed (%)
15.0
Number of peaks
61437 (qval < 1E-05)

hg19

Number of total reads
32854662
Reads aligned (%)
96.3
Duplicates removed (%)
16.5
Number of peaks
61284 (qval < 1E-05)

Base call quality data from DBCLS SRA