Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD20+ B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD20+_RO01778
biomaterial_provider
Rajinder Kaul, UW
donor_id
ENCDO114AAA
biomaterial_type
primary cell
cell_type
B cell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseSeq
datatype description
DNaseI HS Sequencing
cell
CD20+_RO01778
cell organism
human
cell description
B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
labexpid
DS17541
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
2

Sequenced DNA Library

library_name
GSM1024766: UW_DnaseSeq_CD20+_RO01778Rep2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
42081770
Reads aligned (%)
77.2
Duplicates removed (%)
20.5
Number of peaks
41683 (qval < 1E-05)

hg38

Number of total reads
42081770
Reads aligned (%)
79.7
Duplicates removed (%)
18.6
Number of peaks
41760 (qval < 1E-05)

Base call quality data from DBCLS SRA