Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

CD20+ B cells

NA

NA

Sample

source_name

CD20+_RO01778

biomaterial_provider

Rajinder Kaul, UW

donor_id

ENCDO114AAA

biomaterial_type

primary cell

cell_type

B cell

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell

CD20+_RO01778

cell organism

human

cell description

B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

labexpid

DS17541

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

replicate

2

Sequenced DNA Library

library_name

GSM1024766: UW_DnaseSeq_CD20+_RO01778Rep2

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

42081770

Reads aligned (%)

97.9

Duplicates removed (%)

18.6

Number of peaks

41760 (qval < 1E-05)

hg19

Number of total reads

42081770

Reads aligned (%)

97.1

Duplicates removed (%)

20.5

Number of peaks

41683 (qval < 1E-05)