Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Cardiovascular

Cell type

HPAEC

Tissue

blood vessel

Lineage

mesoderm

Description

pulmonary artery endothelial cells.

Sample

source_name

HPAEC

biomaterial_provider

Lonza

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell

HPAEC

cell organism

human

cell description

pulmonary artery endothelial cells.

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

labexpid

DS12916

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

replicate

1

Sequenced DNA Library

library_name

GSM1024763: UW_DnaseSeq_HPAECRep1

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

42951401

Reads aligned (%)

95.5

Duplicates removed (%)

11.5

Number of peaks

55447 (qval < 1E-05)

hg19

Number of total reads

42951401

Reads aligned (%)

94.9

Duplicates removed (%)

12.8

Number of peaks

55293 (qval < 1E-05)