Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Prostate

Cell type

PrEC

Tissue

prostate

Lineage

epithelial

Description

prostate epithelial cell line

Sample

source_name

PrEC

biomaterial_provider

Lonza

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell

PrEC

cell organism

human

cell description

prostate epithelial cell line

cell karyotype

normal

cell lineage

epithelial

cell sex

U

treatment

None

treatment description

No special treatment or protocol applies

labexpid

DS12098

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

replicate

1

Sequenced DNA Library

library_name

GSM1024742: UW_DnaseSeq_PrECRep1

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

46493838

Reads aligned (%)

93.7

Duplicates removed (%)

18.2

Number of peaks

77743 (qval < 1E-05)

hg19

Number of total reads

46493838

Reads aligned (%)

93.1

Duplicates removed (%)

19.4

Number of peaks

77262 (qval < 1E-05)