SRX2007554
GSM2264593: MCF7 input ShMEN1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
chip antibody
none
cell line
MCF-7
induced
ShMEN1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked, lysed in a buffer containing SDS and sonicated. ThruPLEX-FD Prep kit, Rubicon Genomics

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14585190
Reads aligned (%)
99.3
Duplicates removed (%)
1.5
Number of peaks
153 (qval < 1E-05)

hg19

Number of total reads
14585190
Reads aligned (%)
98.6
Duplicates removed (%)
2.5
Number of peaks
585 (qval < 1E-05)

Base call quality data from DBCLS SRA