SRX200052
GSM1023626: LaminA ChIP, HGPS, p16, rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LMNA

Cell type

Cell type Class
Epidermis
Cell type
Forearm skin
NA
NA

Attributes by original data submitter

Sample

source_name
patient forearm skin biopsy, lamin ChIP
disease status
Hutchinson-Gilford progeria syndrome
tissue
forearm skin biopsy
cell type
fibroblasts
gender
male
cell line
HGADFN167
passage
16
chip antibody
goat anti-lamin A/C N18
antibody vendor
Santa Cruz
antibody catalog number
sc-6215

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
35418393
Reads aligned (%)
94.9
Duplicates removed (%)
11.7
Number of peaks
1297 (qval < 1E-05)

hg38

Number of total reads
35418393
Reads aligned (%)
96.0
Duplicates removed (%)
10.2
Number of peaks
1168 (qval < 1E-05)

Base call quality data from DBCLS SRA