SRX200049
GSM1023623: LaminA ChIP, Father, p16, INPUT, rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblast
NA
NA

Attributes by original data submitter

Sample

source_name
normal forearm skin biopsy, input
disease status
normal
tissue
forearm skin biopsy
cell type
fibroblasts
gender
male
cell line
HGFDFN168
passage
16
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32312673
Reads aligned (%)
65.3
Duplicates removed (%)
26.6
Number of peaks
3539 (qval < 1E-05)

hg19

Number of total reads
32312673
Reads aligned (%)
65.1
Duplicates removed (%)
27.0
Number of peaks
3591 (qval < 1E-05)

Base call quality data from DBCLS SRA