SRX199885
GSM1022657: UW ChipSeq HCM CTCFRep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cardiovascular
Cell type
HCM
Tissue
heart
Lineage
mesoderm
Description
cardiac myocytes

Attributes by original data submitter

Sample

source_name
HCM
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HCM
cell organism
human
cell description
cardiac myocytes
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
antibody
CTCF
antibody antibodydescription
Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname
Millipore
antibody vendorid
07-729
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000946
labexpid
DS18566
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
1

Sequenced DNA Library

library_name
GSM1022657: UW_ChipSeq_HCM_CTCFRep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
18472987
Reads aligned (%)
91.4
Duplicates removed (%)
14.8
Number of peaks
34235 (qval < 1E-05)

hg38

Number of total reads
18472987
Reads aligned (%)
92.1
Duplicates removed (%)
13.7
Number of peaks
33787 (qval < 1E-05)

Base call quality data from DBCLS SRA