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For hg38
BigWig
Peak-call (q < 1E-05)
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For hg19
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K23ac
wikigenes
PDBj
CellType: SK-BR-3
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1998197
GSM2258951: SKBR3.H3K23ac; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K23ac
Cell type
Cell type Class
Breast
Cell type
SK-BR-3
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
SKBR3 cells, H3K23ac ChIP
cell line
SKBR3
cell type
Breast cancer cell line
treatment
Control
chip antibody
H3K23ac (Millipore, 07-355, lot 2137082)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP-seq libraries were prepared for sequencing using standard Illumina protocols.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
56837367
Reads aligned (%)
89.7
Duplicates removed (%)
2.3
Number of peaks
4332 (qval < 1E-05)
hg19
Number of total reads
56837367
Reads aligned (%)
89.3
Duplicates removed (%)
3.0
Number of peaks
4241 (qval < 1E-05)
Base call quality data from
DBCLS SRA