Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Digestive tract
Cell type
Small intestine lamina propria
NA
NA

Attributes by original data submitter

Sample

source_name
ILC3B K27Ac WT
cell type
ILC3
tissue
Small intestine lamina propria
strain
C57BL6
chip antibody1
H3K27Ac

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were extracted using the lamina propria dissociation kit (Miltenyi Biotech). Cells were crosslinked and FACS sorted into MACS buffer and Chromatin was analysed using iChIP (Lara-Aatiaso et al.) with our new modification iChIP-IVT protocol developed by (Lara-Astiaso et al.) with our modification iChIP-IVT.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
22740242
Reads aligned (%)
39.7
Duplicates removed (%)
13.9
Number of peaks
3825 (qval < 1E-05)

mm9

Number of total reads
22740242
Reads aligned (%)
39.6
Duplicates removed (%)
14.0
Number of peaks
3812 (qval < 1E-05)

Base call quality data from DBCLS SRA