Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Digestive tract
Cell type
Small intestine lamina propria
NA
NA

Attributes by original data submitter

Sample

source_name
ILC3A K4me3 WT
cell type
ILC3
tissue
Small intestine lamina propria
strain
C57BL6
chip antibody1
H3K4me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were extracted using the lamina propria dissociation kit (Miltenyi Biotech). Cells were crosslinked and FACS sorted into MACS buffer and Chromatin was analysed using iChIP (Lara-Aatiaso et al.) with our new modification iChIP-IVT protocol developed by (Lara-Astiaso et al.) with our modification iChIP-IVT.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
19429547
Reads aligned (%)
36.5
Duplicates removed (%)
18.4
Number of peaks
13295 (qval < 1E-05)

mm9

Number of total reads
19429547
Reads aligned (%)
36.4
Duplicates removed (%)
18.5
Number of peaks
13306 (qval < 1E-05)

Base call quality data from DBCLS SRA