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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Early embryo
ATCC
MeSH
RIKEN BRC
SRX1995068
ChIPseq of H3K9me3 wt C. elegans
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Embryo
Cell type
Early embryo
NA
NA
Attributes by original data submitter
Sample
strain
N2
isolate
not applicable
breed
not applicable
cultivar
not applicable
ecotype
not applicable
age
not applicable
dev_stage
early embryo
sex
hermaphrodite
tissue
embryo
Sequenced DNA Library
library_name
ChIP_H3K9me3_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
15852792
Reads aligned (%)
91.9
Duplicates removed (%)
34.5
Number of peaks
4150 (qval < 1E-05)
ce10
Number of total reads
15852792
Reads aligned (%)
91.9
Duplicates removed (%)
34.5
Number of peaks
4145 (qval < 1E-05)
Base call quality data from
DBCLS SRA