Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cervix
cell line
HeLa
genetic background
Harboring inducible shRNA expressing cassette
culture medium
Starvation: Culture in 0.5% FBS medium for 2 days
agent
ERK inhibitor 3 hours at 1uM

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin associate RNA were extracted from cultured cells for RNA-seq. DNA was immuno-precipitated with antibody from sonicated cell lysate. RNA and CHIP libraries were prepared with NEBNext Library Prep Kits for Illumina using standard Illumina protocols

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
47341621
Reads aligned (%)
96.5
Duplicates removed (%)
54.0
Number of peaks
31427 (qval < 1E-05)

hg19

Number of total reads
47341621
Reads aligned (%)
96.2
Duplicates removed (%)
54.2
Number of peaks
31347 (qval < 1E-05)

Base call quality data from DBCLS SRA