Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cervix
cell line
HeLa
genetic background
Harboring inducible shRNA expressing cassette
culture medium
Starvation: Culture in 0.5% FBS medium for 2 days
agent
DMSO treatment for 3 hours

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin associate RNA were extracted from cultured cells for RNA-seq. DNA was immuno-precipitated with antibody from sonicated cell lysate. RNA and CHIP libraries were prepared with NEBNext Library Prep Kits for Illumina using standard Illumina protocols

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
61786896
Reads aligned (%)
96.8
Duplicates removed (%)
28.4
Number of peaks
35160 (qval < 1E-05)

hg19

Number of total reads
61786896
Reads aligned (%)
96.4
Duplicates removed (%)
28.7
Number of peaks
35091 (qval < 1E-05)

Base call quality data from DBCLS SRA