SRX1993679
GSM2257272: Oct1 ChIPseq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
C57BL/6
tissue
Embryonic stem cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIPseq libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
114479993
Reads aligned (%)
84.5
Duplicates removed (%)
61.1
Number of peaks
1028 (qval < 1E-05)

mm9

Number of total reads
114479993
Reads aligned (%)
84.0
Duplicates removed (%)
61.0
Number of peaks
1308 (qval < 1E-05)

Base call quality data from DBCLS SRA