SRX1990938
GSM2256207: DNA methylation in iAsT cells; Homo sapiens; Bisulfite-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Lung
Cell type
Lung epithelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
Lung Epithelial
cell type
iAs-transformed lung epithelial cells

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
Genomic DNA was extracted using Qiagen Dneasykit according to manusfacturers instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38877710
Reads aligned (%)
48.7
Coverage rate (×)
1.1
Number of hyper MRs
200914 (qval < 1E-05)

hg19

Number of total reads
38877710
Reads aligned (%)
49.5
Coverage rate (×)
1.2
Number of hyper MRs
205272 (qval < 1E-05)

Base call quality data from DBCLS SRA