SRX19862089
GSM7142332: LNCaP LIN37 DF EtOH; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LIN9

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
cell line
LNCaP
cell type
Prostate adenocarcinoma
chip antibody
Bethyl Laboratories, A300-BL298
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM7142332
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
iDeal ChIP-seq Kit for Transcription Factors (Diagenode, #C01010170) MicroPlex Library Preparation Kit v3 (Diagenode, #C05010014) and 24 Dual indexes for MicroPlex Kit v3 (Diagenode, #C05010003)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29122825
Reads aligned (%)
92.1
Duplicates removed (%)
12.0
Number of peaks
4120 (qval < 1E-05)

hg19

Number of total reads
29122825
Reads aligned (%)
91.4
Duplicates removed (%)
12.3
Number of peaks
3981 (qval < 1E-05)

Base call quality data from DBCLS SRA