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For hg38
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: E2F1
wikigenes
PDBj
CellType: LNCAP
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX19862086
GSM7142329: B72 E2F1 R1881 3b; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
E2F1
Cell type
Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
LNCaP-DKO B72
cell line
LNCaP-DKO B72
cell type
Prostate adenocarcinoma
chip antibody
BDBiosciences, #554213
geo_loc_name
missing
collection_date
missing
Sequenced DNA Library
library_name
GSM7142329
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
iDeal ChIP-seq Kit for Transcription Factors (Diagenode, #C01010170) MicroPlex Library Preparation Kit v3 (Diagenode, #C05010014) and 24 Dual indexes for MicroPlex Kit v3 (Diagenode, #C05010003)
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
44884969
Reads aligned (%)
83.2
Duplicates removed (%)
91.0
Number of peaks
482 (qval < 1E-05)
hg19
Number of total reads
44884969
Reads aligned (%)
82.5
Duplicates removed (%)
91.6
Number of peaks
419 (qval < 1E-05)
Base call quality data from
DBCLS SRA