SRX19862084
GSM7142327: B72 E2F1 R1881 1b; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
E2F1

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP-DKO B72
cell line
LNCaP-DKO B72
cell type
Prostate adenocarcinoma
chip antibody
BDBiosciences, #554213
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM7142327
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
iDeal ChIP-seq Kit for Transcription Factors (Diagenode, #C01010170) MicroPlex Library Preparation Kit v3 (Diagenode, #C05010014) and 24 Dual indexes for MicroPlex Kit v3 (Diagenode, #C05010003)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
73118591
Reads aligned (%)
89.5
Duplicates removed (%)
86.8
Number of peaks
1420 (qval < 1E-05)

hg19

Number of total reads
73118591
Reads aligned (%)
88.8
Duplicates removed (%)
87.5
Number of peaks
1292 (qval < 1E-05)

Base call quality data from DBCLS SRA