SRX1978386
GSM2252905: input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
input DNA
cell line
PC3
tissue
prostate; derived from metastatic site: bone
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The chromatin was prepared and followed by ChIP-Seq analysis by Active Motif, Inc. using the antibody against H3K36me2( Millipore). Libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25565255
Reads aligned (%)
97.9
Duplicates removed (%)
8.9
Number of peaks
626 (qval < 1E-05)

hg19

Number of total reads
25565255
Reads aligned (%)
97.6
Duplicates removed (%)
9.5
Number of peaks
671 (qval < 1E-05)

Base call quality data from DBCLS SRA