SRX197580
GSM1022908: ChIP-seq Pol II in pre-MBT embryos (replicate 2); Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Embryo
Cell type
1-2h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Staged embryos
Stage
pre-MBT 01to02h AEL
genotype
Oregon-R
ChIP
Pol II
antibody vendor/catalog
Covance 8WG16 (MMS-126R)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
36899495
Reads aligned (%)
27.3
Duplicates removed (%)
50.3
Number of peaks
2913 (qval < 1E-05)

dm3

Number of total reads
36899495
Reads aligned (%)
27.7
Duplicates removed (%)
45.6
Number of peaks
2376 (qval < 1E-05)

Base call quality data from DBCLS SRA