SRX197550
GSM1022924: PCA4; Homo sapiens; Bisulfite-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Prostate
Cell type
Prostate cancer
NA
NA

Attributes by original data submitter

Sample

source_name
prostate
tissue type
Primary, Prostate cancer, localized

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
96058519
Reads aligned (%)
64.6
Coverage rate (×)
2.4
Number of hyper MRs
118006 (qval < 1E-05)

hg19

Number of total reads
96058519
Reads aligned (%)
64.9
Coverage rate (×)
2.7
Number of hyper MRs
121412 (qval < 1E-05)

Base call quality data from DBCLS SRA