Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Yeast strain
Cell type
LRY1926
NA
NA

Attributes by original data submitter

Sample

source_name
yeast cells
cell type
early log phase
strain
LRY1926
genotype/variation
Sir2 Ha tagged strain
chip antibody
anti-HA (Sigma, catalog# H6908, lot# 072M4847)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were lysed by vortexing with glass beads in the presence of protease inhibitors. The samples were then sonicated four times for 10 seconds to shear the DNA. Samples were pre-cleared using protein A agarose beads for 30 minutes with rotation at 4C. Samples were then incubated at 4C overnight with 5µL of anti-HA (Sigma H6908). Sir2-HA and Hst1-HA were pulled down using protein A agarose beads. The DNA was eluted from the beads and crosslinking was reversed at 65C overnight. The DNA was extracted with phenol chloroform. The DNA was resuspended in 25 uM tris. ChIP samples were sent for ChIP-seq library preparation and 50 cycle single read sequencing on an Illumina HiSeq2500 at The University at Buffalo Genomics and Sequencing Core.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

sacCer3

Number of total reads
8367428
Reads aligned (%)
79.9
Duplicates removed (%)
76.8
Number of peaks
147 (qval < 1E-05)

Base call quality data from DBCLS SRA