Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TAF1

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T-47D
cell line
T-47D
cell type
Breast; Ductal Carcinoma
chip antibody
TAF II p250/TAF1 (sc-735)
treatment
10 nM 17beta-estradiol
time
1 hour

Sequenced DNA Library

library_name
GSM7093746
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed in 1% formaldehyde for 10 minutes at room temperature and then treated with 125 mM Glycine for 5 minutes to stop crosslinking. Crosslinked cells were then washed with cold PBS and scraped to harvest. ChIP and library construction was performed as described in Reddy et al, Genome Research, 2009.

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg38

Number of total reads
12022318
Reads aligned (%)
95.7
Duplicates removed (%)
23.1
Number of peaks
5370 (qval < 1E-05)

hg19

Number of total reads
12022318
Reads aligned (%)
95.0
Duplicates removed (%)
23.3
Number of peaks
5324 (qval < 1E-05)

Base call quality data from DBCLS SRA