SRX196428
GSM1021002: shvec.H3K36me2 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me2

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA-MB-231 breast cancer cells
cell line
MDA-MB-231
cell type
breast cancer cells
genotype/variation
vector control
chip antibody
Anti-Histone H3 (di methyl K36) antibody
chip antibody vendor
abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13048289
Reads aligned (%)
99.3
Duplicates removed (%)
2.5
Number of peaks
1038 (qval < 1E-05)

hg19

Number of total reads
13048289
Reads aligned (%)
99.0
Duplicates removed (%)
2.7
Number of peaks
1100 (qval < 1E-05)

Base call quality data from DBCLS SRA