SRX196427
GSM1021001: shEZH2 H3K36me2 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me2

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA-MB-231 breast cancer cells
cell line
MDA-MB-231
cell type
breast cancer cells
genotype/variation
stable EZH2 knockdown
chip antibody
Anti-Histone H3 (di methyl K36) antibody
chip antibody vendor
abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25685804
Reads aligned (%)
99.1
Duplicates removed (%)
1.5
Number of peaks
198 (qval < 1E-05)

hg19

Number of total reads
25685804
Reads aligned (%)
98.6
Duplicates removed (%)
2.3
Number of peaks
268 (qval < 1E-05)

Base call quality data from DBCLS SRA