Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2AK119Ub

Cell type

Cell type Class
Bone
Cell type
HT-1080
Primary Tissue
Bone
Tissue Diagnosis
Fibrosarcoma

Attributes by original data submitter

Sample

source_name
fibrosarcoma
cell line
HT1080
chip antibody
anti-H2AubK119
sirna
siVRK1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
38058955
Reads aligned (%)
96.8
Duplicates removed (%)
15.8
Number of peaks
518 (qval < 1E-05)

hg19

Number of total reads
38058955
Reads aligned (%)
96.0
Duplicates removed (%)
17.3
Number of peaks
637 (qval < 1E-05)

Base call quality data from DBCLS SRA