Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR1H2

Cell type

Cell type Class
Adipocyte
Cell type
SGBS
NA
NA

Attributes by original data submitter

Sample

source_name
SGBS cell line undergoing differentiation for 10 days
cell type
adipocyte
chip antibody
LXR (antibody from Dr. Eckardt Treuter, Karolinska Institute)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
27225539
Reads aligned (%)
76.7
Duplicates removed (%)
16.1
Number of peaks
1107 (qval < 1E-05)

hg38

Number of total reads
27225539
Reads aligned (%)
79.0
Duplicates removed (%)
14.4
Number of peaks
913 (qval < 1E-05)

Base call quality data from DBCLS SRA