Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KLF4

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
KLF4_ChIP
cell line
MCF7
library id
JC832
antibody
KLF4; R&D systems AF3640-Lot(xvh0310101)
treatment
MCF7 cells in Complete DMEM media

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
10726152
Reads aligned (%)
70.6
Duplicates removed (%)
18.3
Number of peaks
1652 (qval < 1E-05)

hg38

Number of total reads
10726152
Reads aligned (%)
72.5
Duplicates removed (%)
16.8
Number of peaks
1608 (qval < 1E-05)

Base call quality data from DBCLS SRA