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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Ep300
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX194533
GSM1019072: p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate a; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Ep300
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
GEO Accession
GSM1019072
strain
C57BL/6-ICR
cell
ES cells
antibody
p300 ChIP-Seq, sc-585 (Santa Cruz)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiScanSQ
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
42966670
Reads aligned (%)
92.8
Duplicates removed (%)
46.4
Number of peaks
9069 (qval < 1E-05)
mm9
Number of total reads
42966670
Reads aligned (%)
92.6
Duplicates removed (%)
46.5
Number of peaks
9055 (qval < 1E-05)
Base call quality data from
DBCLS SRA